C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 188, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028105 Fam188a-001 ENSMUSG00000026767 10090 - 2:12347265-12419469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028105
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028105 4.079±0.37 8.769±1.08 6.841±1.22 6.970±4.15 3.143±0.73 4.129±0.83 1.667±0.05 5.829±1.03 5.965±2.15 5.838±1.27 1.185±0.29 2.992±0.41 4.976±3.28 3.830±1.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088I CIL_00088I_0002 VISTA 2:11765185-12368019
CIL_0002HM CIL_0002HM_0002 CGP 2:12106632-12419469
CIL_0002HH CIL_0002HH_0002 CGP 2:12347263-13003453

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006915 IEA apoptotic process
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277632 FAM188A-001 protein_coding Homo_sapiens 0 2202
ENST00000378036 FAM188A-003 protein_coding Homo_sapiens 0 1057
ENST00000418767 FAM188A-006 protein_coding Homo_sapiens 0 761
ENST00000436829 FAM188A-005 protein_coding Homo_sapiens 0 684
ENST00000476912 FAM188A-007 processed_transcript Homo_sapiens 0 425
ENST00000477891 FAM188A-002 processed_transcript Homo_sapiens 0 1509

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