C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 188, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144645 Fam188a-004 ENSMUSG00000026767 10090 - 2:12347920-12419452 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000144645
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000144645 2.490±0.33 4.975±0.00 5.322±0.64 1.021±0.24 4.349±0.90 3.604±0.42 4.650±0.64 4.167±0.85 2.422±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088I CIL_00088I_0002 VISTA 2:11765185-12368019
CIL_0002HM CIL_0002HM_0002 CGP 2:12106632-12419469
CIL_0002HH CIL_0002HH_0002 CGP 2:12347263-13003453

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277632 FAM188A-001 protein_coding Homo_sapiens 0 929
ENST00000378036 FAM188A-003 protein_coding Homo_sapiens 0 477
ENST00000418767 FAM188A-006 protein_coding Homo_sapiens 0 761
ENST00000436829 FAM188A-005 protein_coding Homo_sapiens 0 682
ENST00000476912 FAM188A-007 processed_transcript Homo_sapiens 0 292
ENST00000477891 FAM188A-002 processed_transcript Homo_sapiens 0 929

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