C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 188, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148481 FAM188A 9606 - 10:15778170-15860520 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000277632 FAM188A-001 15778170-15860520 protein_coding
  ENST00000378036 FAM188A-003 15778170-15818008 protein_coding
  ENST00000418767 FAM188A-006 15788828-15837299 protein_coding
  ENST00000436829 FAM188A-005 15796120-15838279 protein_coding
  ENST00000476912 FAM188A-007 15778854-15782335 processed_transcript
  ENST00000477891 FAM188A-002 15778170-15860498 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000277632ENST00000436829ENST00000476912ENST00000477891
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000277632 4.306±0.00 3.785±0.00 9.048±3.87 4.614±0.00 1.829±0.00 1.906±0.00 5.224±3.07 2.029±0.00 0.536±0.00 N/A 4.991±0.46 5.650±1.03 7.625±0.71
ENST00000436829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.665±0.00 5.174±0.00 8.685±0.00
ENST00000476912 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.517±0.00 N/A N/A N/A
ENST00000477891 N/A 1.301±0.00 1.356±0.00 1.032±0.00 2.151±0.30 1.088±0.07 N/A 1.298±0.63 2.801±0.00 0.645±0.28 1.042±0.15 1.090±0.00 1.715±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088I CIL_00088I_0001 VISTA 10:15191068-15798325
CIL_0002HM CIL_0002HM_0001 CGP 10:15513949-15860520
CIL_0002HH CIL_0002HH_0001 CGP 10:15778170-16513745

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006915 IEA apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028715 fam188a family with sequence similarity 188, member A protein_coding Danio_rerio
ENSMUSG00000026767 Fam188a family with sequence similarity 188, member A protein_coding Mus_musculus

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