C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosome binding domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380749 HMGN1-001 ENSG00000205581 9606 - 21:39342315-39349200 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380749
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380749 38.088±0.00 12.319±0.00 6.537±0.00 6.400±3.38 21.325±8.28 17.905±4.82 4.615±2.21 21.847±10.50 13.447±5.08 31.387±21.87 2.102±0.82 54.972±34.69 32.054±6.32 31.469±15.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KG CIL_0004KG_0001 CGP 21:39184176-39349647
CIL_0003GM CIL_0003GM_0001 CGP 21:39342315-39428528

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000720 IEA pyrimidine dimer repair by nucleotide-excision repair
GO:0000785 IEA chromatin
GO:0003677 TAS DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006283 IEA transcription-coupled nucleotide-excision repair
GO:0006325 IEA chromatin organization
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0010224 IEA response to UV-B
GO:0010225 IEA response to UV-C
GO:0031492 IEA nucleosomal DNA binding
GO:0032786 TAS positive regulation of DNA-templated transcription, elongation
GO:0040034 IEA regulation of development, heterochronic
GO:0048597 IEA post-embryonic camera-type eye morphogenesis
GO:0050678 IEA regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050884 Hmgn1-001 protein_coding Mus_musculus 0 590
ENSMUST00000145713 Hmgn1-003 retained_intron Mus_musculus 0 281

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