C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: insulin-like growth factor 2 mRNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382199 IGF2BP2-001 ENSG00000073792 9606 - 3:185643739-185825056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000382199
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000382199 2.515±0.00 0.358±0.00 0.928±0.00 1.537±0.38 3.266±0.00 1.072±0.82 0.205±0.00 3.604±1.62 27.017±28.08 5.311±0.72 0.707±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0001 VISTA 3:185444884-186046681
CIL_0006RH CIL_0006RH_0001 CGP 3:185582496-185825056
CIL_0003YC CIL_0003YC_0002 CGP 3:185643739-185938136

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 IDA cytoskeleton
GO:0009653 TAS anatomical structure morphogenesis
GO:0010467 TAS gene expression
GO:0017148 ISS negative regulation of translation
GO:0042035 IC regulation of cytokine biosynthetic process
GO:0044822 IDA poly(A) RNA binding
GO:0045182 ISS translation regulator activity
GO:0048027 IDA mRNA 5'-UTR binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100052 Igf2bp2-001 protein_coding Mus_musculus 0 3795
ENSMUST00000134188 Igf2bp2-009 retained_intron Mus_musculus 0 3199
ENSMUST00000115379 Igf2bp2-004 protein_coding Mus_musculus 0 2937
ENSMUST00000129913 Igf2bp2-003 retained_intron Mus_musculus 0 1914
ENSMUST00000125926 Igf2bp2-005 processed_transcript Mus_musculus 0 446
ENSMUST00000127696 Igf2bp2-002 retained_intron Mus_musculus 0 422
ENSMUST00000146885 Igf2bp2-006 retained_intron Mus_musculus 0 309
ENSMUST00000124318 Igf2bp2-007 retained_intron Mus_musculus 0 298
ENSMUST00000151087 Igf2bp2-008 processed_transcript Mus_musculus 0 195

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