C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: insulin-like growth factor 2 mRNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100052 Igf2bp2-001 ENSMUSG00000033581 10090 - 16:22059009-22163299 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100052
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100052 1.141±0.74 0.584±0.14 0.530±0.09 1.696±0.20 0.392±0.15 3.745±0.84 0.282±0.10 0.702±0.29 0.896±0.37 1.307±0.13 0.216±0.01 1.026±0.40 6.203±2.09 0.132±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0002 VISTA 16:21809929-22410861
CIL_0006RH CIL_0006RH_0002 CGP 16:22009484-22163299
CIL_0003YC CIL_0003YC_0003 CGP 16:22059009-22266005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005856 ISS cytoskeleton
GO:0006417 IEA regulation of translation
GO:0044822 IEA poly(A) RNA binding
GO:0048027 ISS mRNA 5'-UTR binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346192 IGF2BP2-002 protein_coding Homo_sapiens 0 1938
ENST00000382199 IGF2BP2-001 protein_coding Homo_sapiens 0 3795
ENST00000421047 IGF2BP2-201 protein_coding Homo_sapiens 0 1934
ENST00000435000 RP11-325P15.1-001 processed_pseudogene Homo_sapiens 0 1062
ENST00000440915 AP004290.1-001 processed_pseudogene Homo_sapiens 0 863
ENST00000457616 IGF2BP2-008 protein_coding Homo_sapiens 0 3459
ENST00000461957 IGF2BP2-005 processed_transcript Homo_sapiens 0 241
ENST00000464166 IGF2BP2-003 processed_transcript Homo_sapiens 0 307
ENST00000466476 IGF2BP2-006 processed_transcript Homo_sapiens 0 429
ENST00000493302 IGF2BP2-007 processed_transcript Homo_sapiens 0 303
ENST00000494906 IGF2BP2-010 processed_transcript Homo_sapiens 0 460
ENST00000550858 RP11-76E16.2-001 processed_pseudogene Homo_sapiens 0 1188

Loading