C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Zic family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000383075 ZIC4-001 ENSG00000174963 9606 - 3:147386046-147406860 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JF CIL_0007JF_0001 UCNEbase 3:146747615-148369526
CIL_00092K CIL_00092K_0001 VISTA 3:147012442-147613983
CIL_00092J CIL_00092J_0001 VISTA 3:147031749-147633313
CIL_0008O7 CIL_0008O7_0001 VISTA 3:147107359-147708549
CIL_0009D8 CIL_0009D8_0001 VISTA 3:147360760-147962816
CIL_0009BL CIL_0009BL_0001 VISTA 3:147375234-147976562

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005634 ISS nucleus
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172646 Zic4-001 protein_coding Mus_musculus 0 2721
ENSMUST00000066384 Zic4-008 protein_coding Mus_musculus 0 2266
ENSMUST00000173933 Zic4-003 protein_coding Mus_musculus 0 1796
ENSMUST00000085242 Zic4-012 processed_transcript Mus_musculus 0 1509
ENSMUST00000174611 Zic4-004 retained_intron Mus_musculus 0 1315
ENSMUST00000172858 Zic4-010 retained_intron Mus_musculus 0 1066
ENSMUST00000170572 Zic4-005 retained_intron Mus_musculus 0 865
ENSMUST00000173054 Zic4-011 protein_coding Mus_musculus 0 617
ENSMUST00000174212 Zic4-007 protein_coding Mus_musculus 0 525
ENSMUST00000065360 Zic1-002 protein_coding Mus_musculus 0 472
ENSMUST00000034927 Zic1-001 protein_coding Mus_musculus 0 472
ENSMUST00000075888 Zic2-001 protein_coding Mus_musculus 0 420
ENSDART00000010774 zic2a-001 protein_coding Danio_rerio 0 324
ENSMUST00000172978 Zic4-009 processed_transcript Mus_musculus 0 265

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