C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zic family member 2 (odd-paired homolog, Drosophila), a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000010774 zic2a-001 ENSDARG00000015554 7955 + 9:32315469-32320318 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000010774
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000010774 121.264±9.54 0.029±0.01 0.037±0.01 0.051±0.00 4.218±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FV CIL_0004FV_0001 CGP 9:32201019-32347632
CIL_0007LI CIL_0007LI_0003 UCNEbase 9:32223724-32524953
CIL_0004FW CIL_0004FW_0001 CGP 9:32307416-32347632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001841 IGI neural tube formation
GO:0003676 IEA nucleic acid binding
GO:0008589 IMP regulation of smoothened signaling pathway
GO:0009953 IGI dorsal/ventral pattern formation
GO:0014032 IMP neural crest cell development
GO:0021536 IGI diencephalon development
GO:0021846 IMP cell proliferation in forebrain
GO:0030901 IMP midbrain development
GO:0033278 IMP cell proliferation in midbrain
GO:0042127 IMP regulation of cell proliferation
GO:0045892 IMP negative regulation of transcription, DNA-dependent
GO:0046872 IEA metal ion binding
GO:0048703 IMP embryonic viscerocranium morphogenesis
GO:0060059 IMP embryonic retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034927 Zic1-001 protein_coding Mus_musculus 0 444
ENSMUST00000065360 Zic1-002 protein_coding Mus_musculus 0 444
ENSMUST00000066384 Zic4-008 protein_coding Mus_musculus 0 342
ENSMUST00000075888 Zic2-001 protein_coding Mus_musculus 0 721
ENSMUST00000170572 Zic4-005 retained_intron Mus_musculus 0 239
ENSMUST00000172646 Zic4-001 protein_coding Mus_musculus 0 342
ENSMUST00000172858 Zic4-010 retained_intron Mus_musculus 0 342
ENSMUST00000173054 Zic4-011 protein_coding Mus_musculus 5e-24 115
ENSMUST00000173933 Zic4-003 protein_coding Mus_musculus 0 342
ENSMUST00000174212 Zic4-007 protein_coding Mus_musculus 0.000000001 68
ENSMUST00000174611 Zic4-004 retained_intron Mus_musculus 0 239
ENST00000376335 ZIC2-001 protein_coding Homo_sapiens 0 651
ENST00000383075 ZIC4-001 protein_coding Homo_sapiens 0 324
ENST00000425731 ZIC4-201 protein_coding Homo_sapiens 0 324
ENST00000462748 ZIC4-002 protein_coding Homo_sapiens 0 230
ENST00000473123 ZIC4-003 protein_coding Homo_sapiens 0 324
ENST00000484399 ZIC4-004 protein_coding Homo_sapiens 0 324
ENST00000493664 ZIC4-005 retained_intron Homo_sapiens 0 324
ENST00000525172 ZIC4-202 protein_coding Homo_sapiens 0 324
ENST00000620342 ZIC2-201 protein_coding Homo_sapiens 0 636

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