C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, kainate 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389125 GRIK1-001 ENSG00000171189 9606 - 21:29536933-29939625 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000389125
Transcript ID Brain
ENST00000389125 2.348±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DA CIL_0003DA_0001 CGP 21:29077471-29630751
CIL_000317 CIL_000317_0001 CGP 21:29194071-29940033
CIL_00031A CIL_00031A_0001 CGP 21:29536933-30166756

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005234 IBA:IEA extracellular-glutamate-gated ion channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0007215 TAS glutamate receptor signaling pathway
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0007417 TAS central nervous system development
GO:0015277 IDA kainate selective glutamate receptor activity
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0032983 IBA kainate selective glutamate receptor complex
GO:0034220 IEA ion transmembrane transport
GO:0035235 IEA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0042734 IBA presynaptic membrane
GO:0045211 IBA postsynaptic membrane
GO:0051966 TAS regulation of synaptic transmission, glutamatergic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023652 Grik1-201 protein_coding Mus_musculus 0 3524
ENSMUST00000114137 Grik1-203 protein_coding Mus_musculus 0 3275
ENSMUST00000072256 Grik1-202 protein_coding Mus_musculus 0 3275
ENSDART00000147089 grik1a-001 protein_coding Danio_rerio 0 1362
ENSDART00000007778 grik1a-201 protein_coding Danio_rerio 0 1334
ENSMUST00000105484 Grik2-202 protein_coding Mus_musculus 0 1173
ENSMUST00000105487 Grik2-001 protein_coding Mus_musculus 0 1173
ENSMUST00000079751 Grik2-201 protein_coding Mus_musculus 0 1171
ENSMUST00000105486 Grik2-005 protein_coding Mus_musculus 0 1171
ENSMUST00000105485 Grik2-004 protein_coding Mus_musculus 0 1171
ENSDART00000109264 GRIK2 (1 of 2)-201 protein_coding Danio_rerio 0 966

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