C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, kainate 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023652 Grik1-201 ENSMUSG00000022935 10090 - 16:87896196-88056176 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000023652
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000023652 0.222±0.02 0.005±0.00 0.440±0.00 1.178±0.00 0.017±0.00 0.121±0.07 0.030±0.02 0.007±0.01 0.048±0.04 0.093±0.06 0.013±0.00 0.198±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000317 CIL_000317_0002 CGP 16:87698945-88056176
CIL_00031A CIL_00031A_0002 CGP 16:87896196-88506978

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005234 IBA extracellular-glutamate-gated ion channel activity
GO:0005515 IPI protein binding
GO:0008328 IC ionotropic glutamate receptor complex
GO:0014054 IMP positive regulation of gamma-aminobutyric acid secretion
GO:0014069 IDA postsynaptic density
GO:0015277 IGI kainate selective glutamate receptor activity
GO:0016020 IDA membrane
GO:0030054 IEA cell junction
GO:0030425 IDA dendrite
GO:0030534 IMP adult behavior
GO:0032230 IMP positive regulation of synaptic transmission, GABAergic
GO:0032983 IPI kainate selective glutamate receptor complex
GO:0034220 IEA ion transmembrane transport
GO:0035235 IEA ionotropic glutamate receptor signaling pathway
GO:0035249 IMP synaptic transmission, glutamatergic
GO:0042391 IMP regulation of membrane potential
GO:0042734 IDA presynaptic membrane
GO:0045202 IDA synapse
GO:0045211 IBA postsynaptic membrane
GO:0048266 IMP behavioral response to pain
GO:0051899 IMP membrane depolarization
GO:0051967 IGI negative regulation of synaptic transmission, glutamatergic
GO:0060079 IMP regulation of excitatory postsynaptic membrane potential
GO:0060080 IGI regulation of inhibitory postsynaptic membrane potential
GO:0097481 IDA neuronal postsynaptic density

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109264 GRIK2 (1 of 2)-201 protein_coding Danio_rerio 0 989
ENSDART00000031793 GRIK1 (1 of 2)-201 protein_coding Danio_rerio 0 902
ENSDART00000154754 GRIK1 (1 of 2)-001 protein_coding Danio_rerio 0 902
ENSDART00000126812 GRIK2 (2 of 2)-201 protein_coding Danio_rerio 0 689
ENST00000309434 GRIK1-201 protein_coding Homo_sapiens 0 1779
ENST00000318991 GRIK2-201 protein_coding Homo_sapiens 0 1216
ENST00000327783 GRIK1-004 protein_coding Homo_sapiens 0 1779
ENST00000369134 GRIK2-202 protein_coding Homo_sapiens 0 1216
ENST00000369137 GRIK2-203 protein_coding Homo_sapiens 0 1216
ENST00000369138 GRIK2-003 protein_coding Homo_sapiens 0 1216
ENST00000389124 GRIK1-005 protein_coding Homo_sapiens 0 1779
ENST00000389125 GRIK1-001 protein_coding Homo_sapiens 0 3524
ENST00000399907 GRIK1-002 protein_coding Homo_sapiens 0 1779
ENST00000399909 GRIK1-008 protein_coding Homo_sapiens 0 3275
ENST00000399913 GRIK1-006 protein_coding Homo_sapiens 0 2028
ENST00000399914 GRIK1-003 protein_coding Homo_sapiens 0 3275
ENST00000413795 GRIK2-002 protein_coding Homo_sapiens 0 1216
ENST00000421544 GRIK2-001 protein_coding Homo_sapiens 0 1216
ENST00000472429 GRIK1-007 processed_transcript Homo_sapiens 0 1502
ENST00000487161 GRIK2-006 retained_intron Homo_sapiens 0 257
ENST00000535441 GRIK1-202 protein_coding Homo_sapiens 0 3524

Loading