C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: short stature homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389589 SHOX2-001 ENSG00000168779 9606 - 3:158097159-158106160 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SK CIL_0007SK_0001 VISTA 3:157571437-158172574
CIL_0008TK CIL_0008TK_0001 VISTA 3:157757953-158360211
CIL_00098J CIL_00098J_0001 VISTA 3:157833085-158434392
CIL_0007KJ CIL_0007KJ_0001 UCNEbase 3:157856332-158528467
CIL_0007SC CIL_0007SC_0001 VISTA 3:157864514-158466174
CIL_0008QV CIL_0008QV_0001 VISTA 3:157885521-158486853
CIL_0008BN CIL_0008BN_0001 VISTA 3:157971822-158572677
CIL_00086V CIL_00086V_0001 VISTA 3:157991733-158593047
CIL_0008BM CIL_0008BM_0001 VISTA 3:158007957-158609595
CIL_0008KO CIL_0008KO_0001 VISTA 3:158067861-158669043
CIL_0004JW CIL_0004JW_0002 CGP 3:158095954-158545730

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001501 TAS skeletal system development
GO:0001649 IEA osteoblast differentiation
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0002062 IEA chondrocyte differentiation
GO:0002063 IEA chondrocyte development
GO:0003170 IEA heart valve development
GO:0003209 IEA cardiac atrium morphogenesis
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0007399 TAS nervous system development
GO:0007507 TAS heart development
GO:0030326 IEA embryonic limb morphogenesis
GO:0032330 IEA regulation of chondrocyte differentiation
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045880 IEA positive regulation of smoothened signaling pathway
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048557 IEA embryonic digestive tract morphogenesis
GO:0048598 IEA embryonic morphogenesis
GO:0048743 IEA positive regulation of skeletal muscle fiber development
GO:0050772 IEA positive regulation of axonogenesis
GO:0060272 IEA embryonic skeletal joint morphogenesis
GO:0060351 IEA cartilage development involved in endochondral bone morphogenesis
GO:0060415 IEA muscle tissue morphogenesis
GO:2000172 IEA regulation of branching morphogenesis of a nerve

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029422 Shox2-001 protein_coding Mus_musculus 0 1356
ENSMUST00000162060 Shox2-004 protein_coding Mus_musculus 0 780
ENSMUST00000162098 Shox2-002 protein_coding Mus_musculus 0 780
ENSMUST00000162439 Shox2-003 protein_coding Mus_musculus 0 518
ENSMUST00000162036 Rsrc1-001 protein_coding Mus_musculus 0 230

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