C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389924 DDX42-201 ENSG00000198231 9606 + 17:63774189-63819316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389924
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389924 20.067±0.00 17.560±0.00 23.552±0.00 11.643±7.45 6.716±2.10 7.822±6.18 6.375±2.01 5.258±0.89 11.524±0.00 9.535±5.35 18.215±8.91 16.244±3.72 22.707±3.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006Q3 CIL_0006Q3_0001 CGP 17:63745250-63819317
CIL_0006Q4 CIL_0006Q4_0001 CGP 17:63773603-63830012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0008104 IDA protein localization
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021046 Ddx42-001 protein_coding Mus_musculus 0 3869
ENSDART00000127297 ddx42-001 protein_coding Danio_rerio 0 904
ENSMUST00000118480 Gm14745-001 processed_pseudogene Mus_musculus 0 861
ENSDART00000076209 ddx42-201 protein_coding Danio_rerio 0 850
ENSMUST00000152860 Ddx42-002 processed_transcript Mus_musculus 0 350
ENSDART00000151504 ddx42-002 retained_intron Danio_rerio 0.00000003 66

Loading