C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | TCF3 (E2A) fusion partner (in childhood Leukemia) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000391758  |
TFPT-002 |
ENSG00000105619 |
9606 | - |
19:54107020-54115074  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00021A | CIL_00021A_0001 | CGP | 19:54094668-54109257 |
| CIL_0005NN | CIL_0005NN_0001 | CGP | 19:54102728-54115675 |
| CIL_0005O3 | CIL_0005O3_0001 | CGP | 19:54107013-54131719 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005634 | IDA | nucleus |
| GO:0005730 | IDA | nucleolus |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000155592
|
Tfpt-002 | protein_coding | Mus_musculus | 0 | 867 |
|
ENSMUST00000108641
|
Tfpt-001 | protein_coding | Mus_musculus | 0 | 795 |
|
ENSMUST00000058880
|
Tfpt-005 | nonsense_mediated_decay | Mus_musculus | 0 | 547 |
|
ENSMUST00000153143
|
Tfpt-003 | nonsense_mediated_decay | Mus_musculus | 0 | 451 |
|
ENSMUST00000156194
|
Tfpt-004 | processed_transcript | Mus_musculus | 0 | 363 |
