C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392069 PAX3-008 ENSG00000135903 9606 - 2:222199888-222298981 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastMuscleOvaryTestisENST00000392069
Transcript ID Brain Breast Muscle Ovary Testis
ENST00000392069 0.051±0.00 0.098±0.00 0.151±0.00 0.009±0.00 0.100±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XL CIL_0006XL_0001 CGP 2:221418027-222298996
CIL_0008C0 CIL_0008C0_0001 VISTA 2:221914664-222515720
CIL_0008LF CIL_0008LF_0001 VISTA 2:221986023-222587201

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001755 IEA neural crest cell migration
GO:0001843 IEA neural tube closure
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006915 TAS apoptotic process
GO:0007507 IEA heart development
GO:0007517 IEA muscle organ development
GO:0007605 TAS sensory perception of sound
GO:0008283 IEA cell proliferation
GO:0008284 IEA positive regulation of cell proliferation
GO:0009887 TAS organ morphogenesis
GO:0014807 IEA regulation of somitogenesis
GO:0016477 IEA cell migration
GO:0021527 IEA spinal cord association neuron differentiation
GO:0021915 IEA neural tube development
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048066 IEA developmental pigmentation
GO:0048663 IEA neuron fate commitment
GO:0060594 IEA mammary gland specification
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087086 Pax3-001 protein_coding Mus_musculus 0 2128
ENSMUST00000004994 Pax3-002 protein_coding Mus_musculus 0 2128
ENSMUST00000172555 Pax3-003 processed_transcript Mus_musculus 0 950

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