C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392090 PDCD2-007 ENSG00000071994 9606 - 6:170577559-170584581 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENST00000392090
Transcript ID Brain Muscle Ovary Placenta Testis
ENST00000392090 2.780±0.00 2.931±0.00 28.500±19.43 10.026±2.14 11.136±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0001 VISTA 6:170138007-170739776
CIL_00018F CIL_00018F_0001 CGP 6:170554302-170584692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006915 IEA apoptotic process
GO:0019899 IPI enzyme binding
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054450 Pdcd2-001 protein_coding Mus_musculus 0 804
ENSMUST00000125709 Pdcd2-005 retained_intron Mus_musculus 0 348
ENSMUST00000162505 Tbp-001 protein_coding Mus_musculus 0 196

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