C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synuclein, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393693 SNCB-002 ENSG00000074317 9606 - 5:176620241-176630529 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000393693
Transcript ID Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000393693 129.718±111.75 0.456±0.00 0.130±0.00 0.050±0.00 0.170±0.00 0.112±0.00 0.075±0.04 0.248±0.00 0.674±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0002ND CIL_0002ND_0001 CGP 5:176595802-176630556
CIL_0002NC CIL_0002NC_0001 CGP 5:176620084-176646641

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004859 TAS phospholipase inhibitor activity
GO:0005509 IDA calcium ion binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0016234 IDA inclusion body
GO:0043086 TAS negative regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036825 Sncb-001 protein_coding Mus_musculus 0 610
ENSMUST00000134110 Sncb-004 protein_coding Mus_musculus 0 584
ENSMUST00000153829 Sncb-002 retained_intron Mus_musculus 0 381
ENSMUST00000138067 Sncb-003 retained_intron Mus_musculus 0 233

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