C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 2, group F, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394166 NR2F2-001 ENSG00000185551 9606 + 15:96330717-96340263 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394166
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394166 18.878±0.00 20.084±0.00 7.017±0.00 1.192±0.96 4.415±3.51 11.543±0.00 1.929±1.79 9.162±7.94 1.994±0.71 9.091±7.22 2.652±2.48 21.959±20.59 7.060±3.52 11.965±9.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007O7 CIL_0007O7_0001 UCNEbase 15:94530989-96398057
CIL_000932 CIL_000932_0001 VISTA 15:96284824-96887064

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IEA in utero embryonic development
GO:0001764 IEA neuron migration
GO:0001893 IEA maternal placenta development
GO:0001937 IMP negative regulation of endothelial cell proliferation
GO:0001945 IEA lymph vessel development
GO:0001972 IDA retinoic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IC:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003714 TAS transcription corepressor activity
GO:0004879 IEA:IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006629 TAS lipid metabolic process
GO:0007165 TAS signal transduction
GO:0007519 IEA skeletal muscle tissue development
GO:0008270 IEA zinc ion binding
GO:0009566 IEA fertilization
GO:0009952 IEA anterior/posterior pattern specification
GO:0009956 IEA radial pattern formation
GO:0010596 IMP negative regulation of endothelial cell migration
GO:0030522 IEA intracellular receptor signaling pathway
GO:0030900 IEA forebrain development
GO:0032355 IEA response to estradiol
GO:0042803 IPI protein homodimerization activity
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0045736 IDA negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048514 IEA blood vessel morphogenesis
GO:0060173 IEA limb development
GO:0060674 IEA placenta blood vessel development
GO:0060707 IEA trophoblast giant cell differentiation
GO:0060849 IMP regulation of transcription involved in lymphatic endothelial cell fate commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032768 Nr2f2-001 protein_coding Mus_musculus 0 4575
ENSMUST00000089565 Nr2f2-002 protein_coding Mus_musculus 0 1474
ENSMUST00000091458 Nr2f1-001 protein_coding Mus_musculus 0 1020
ENSDART00000130163 nr2f2-001 protein_coding Danio_rerio 0 894
ENSDART00000059976 nr2f2-201 protein_coding Danio_rerio 0 817
ENSDART00000040769 nr2f5-001 protein_coding Danio_rerio 0 532

Loading