C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000932_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1320 VISTA 9606 15:96284824-96887064
GeneTranscriptPositionBiotype
ENSG00000185551 (NR2F2)
nuclear receptor subfamily 2, group F, member 2 		ENST00000394166 (NR2F2-001) 96330717-96340263 protein_coding
ENST00000394171 (NR2F2-201) 96332565-96340263 protein_coding
ENST00000421109 (NR2F2-002) 96325938-96338618 protein_coding
ENST00000453270 (NR2F2-003) 96333163-96337836 protein_coding
ENST00000559679 (NR2F2-004) 96332537-96334372 protein_coding
ENSG00000185594 (SPATA8)
spermatogenesis associated 8 		ENST00000328504 (SPATA8-001) 96783389-96785615 protein_coding
ENST00000558553 (SPATA8-004) 96783474-96785178 protein_coding
ENST00000560327 (SPATA8-002) 96783487-96785608 retained_intron
ENST00000561002 (SPATA8-003) 96783449-96785075 retained_intron
ENSG00000214424 (FAM149B1P1)
family with sequence similarity 149, member B1 pseudogene 1 		ENST00000533428 (FAM149B1P1-001) 96756987-96758596 processed_pseudogene
ENSG00000222617 (RN7SKP254)
RNA, 7SK small nuclear pseudogene 254 		ENST00000410685 (RN7SKP254-201) 96486582-96486891 misc_RNA
ENSG00000223120 (RN7SKP181)
RNA, 7SK small nuclear pseudogene 181 		ENST00000411188 (RN7SKP181-201) 96842069-96842384 misc_RNA
ENSG00000242295 (RP11-522B15.1)
 ENST00000465747 (RP11-522B15.1-001) 96448154-96448493 processed_pseudogene
ENSG00000247809 (NR2F2-AS1)
NR2F2 antisense RNA 1 		ENST00000502125 (NR2F2-AS1-002) 96268772-96327361 antisense
ENST00000557863 (NR2F2-AS1-005) 96282924-96327116 antisense
ENST00000558929 (NR2F2-AS1-008) 96272796-96322645 antisense
ENST00000558935 (NR2F2-AS1-007) 96290444-96327097 antisense
ENST00000559505 (NR2F2-AS1-011) 96153416-96223055 antisense
ENST00000560010 (NR2F2-AS1-004) 96290445-96327327 antisense
ENST00000560170 (NR2F2-AS1-003) 96285226-96327357 antisense
ENST00000560395 (NR2F2-AS1-010) 96266529-96275996 antisense
ENST00000560800 (NR2F2-AS1-006) 96127369-96327021 antisense
ENST00000561344 (NR2F2-AS1-001) 96269815-96327348 antisense
ENST00000561402 (NR2F2-AS1-009) 96266386-96282971 antisense
ENST00000616032 (NR2F2-AS1-014) 96232429-96282855 antisense
ENST00000616912 (NR2F2-AS1-013) 96110040-96126008 antisense
ENST00000618776 (NR2F2-AS1-015) 96232114-96232680 antisense
ENST00000620029 (NR2F2-AS1-012) 96118843-96135469 antisense
ENSG00000250825 (PGAM1P12)
phosphoglycerate mutase 1 pseudogene 12 		ENST00000505622 (PGAM1P12-001) 96441566-96442313 processed_pseudogene
ENSG00000259275 (RP11-522B15.3)
 ENST00000558382 (RP11-522B15.3-001) 96354237-96403803 lincRNA
ENST00000558499 (RP11-522B15.3-002) 96354390-96395016 lincRNA
ENSG00000259282 (SPATA8-AS1)
SPATA8 antisense RNA 1 (head to head) 		ENST00000558722 (SPATA8-AS1-001) 96772007-96783312 antisense
ENST00000560888 (SPATA8-AS1-002) 96772005-96781654 antisense
ENSG00000259312 (RP11-522B15.5)
 ENST00000559214 (RP11-522B15.5-001) 96438570-96444266 lincRNA
ENSG00000259340 (CTD-2027G2.1)
 ENST00000559699 (CTD-2027G2.1-001) 96551381-96551517 processed_pseudogene
ENSG00000259534 (RP11-522B15.7)
 ENST00000560586 (RP11-522B15.7-001) 96448842-96449749 lincRNA
ENSG00000259614 (RP11-522B15.6)
 ENST00000559595 (RP11-522B15.6-001) 96388214-96389056 processed_pseudogene
ENSG00000274079 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000616811 (Metazoa_SRP.1-266) 96496180-96496462 misc_RNA
ENSG00000275322 (RP11-262A16.1)
 ENST00000617440 (RP11-262A16.1-001) 96342953-96345651 lincRNA
ENSG00000275443 (RP11-759A24.3)
 ENST00000619812 (RP11-759A24.3-001) 95990582-96300990 lincRNA
ENSG00000279645 (RP11-759A24.1)
 ENST00000624299 (RP11-759A24.1-001) 96285068-96289265 TEC
ENSG00000280291 (RP11-759A24.2)
 ENST00000623393 (RP11-759A24.2-001) 96294935-96298023 TEC
CIL_000932_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1320 VISTA 10090 7:69817148-70419432
GeneTranscriptPositionBiotype
ENSMUSG00000030551 (Nr2f2)
nuclear receptor subfamily 2, group F, member 2 		ENSMUST00000032768 (Nr2f2-001) 70351946-70360593 protein_coding
ENSMUST00000089565 (Nr2f2-002) 70354439-70366735 protein_coding
ENSMUSG00000101559 (RP24-240G4.3)
predicted gene 28258 		ENSMUST00000189033 (RP24-240G4.3-001) 70372038-70388410 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000932_0001ENSG00000185551ENST00000394166ENST00000394171ENST00000421109ENST00000453270ENST00000559679ENSG00000185594ENST00000328504ENST00000558553ENST00000560327ENST00000561002ENSG00000214424ENST00000533428ENSG00000222617ENST00000410685ENSG00000223120ENST00000411188ENSG00000242295ENST00000465747ENSG00000247809ENST00000502125ENST00000557863ENST00000558929ENST00000558935ENST00000559505ENST00000560010ENST00000560170ENST00000560395ENST00000560800ENST00000561344ENST00000561402ENST00000616032ENST00000616912ENST00000618776ENST00000620029ENSG00000250825ENST00000505622ENSG00000259275ENST00000558382ENST00000558499ENSG00000259282ENST00000558722ENST00000560888ENSG00000259312ENST00000559214ENSG00000259340ENST00000559699ENSG00000259534ENST00000560586ENSG00000259614ENST00000559595ENSG00000274079ENST00000616811ENSG00000275322ENST00000617440ENSG00000275443ENST00000619812ENSG00000279645ENST00000624299ENSG00000280291ENST00000623393CIL_000932_0002ENSMUSG00000030551ENSMUST00000032768ENSMUST00000089565ENSMUSG00000101559ENSMUST00000189033
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000932_0001ENSG00000185551ENST00000394166ENST00000421109ENST00000453270ENSG00000185594ENST00000328504ENST00000558553ENST00000560327ENSG00000214424ENST00000533428ENSG00000222617ENST00000410685ENSG00000223120ENST00000411188ENSG00000242295ENST00000465747ENSG00000247809ENST00000502125ENST00000557863ENST00000558929ENST00000558935ENST00000559505ENST00000560010ENST00000560170ENST00000560395ENST00000560800ENST00000561344ENST00000561402ENST00000616912ENST00000618776ENST00000620029ENSG00000250825ENST00000505622ENSG00000259275ENST00000558382ENST00000558499ENSG00000259282ENST00000558722ENSG00000259312ENST00000559214ENSG00000259340ENST00000559699ENSG00000259534ENST00000560586ENSG00000259614ENST00000559595ENSG00000274079ENST00000616811ENSG00000275322ENST00000617440ENSG00000275443ENST00000619812ENSG00000279645ENST00000624299ENSG00000280291ENST00000623393CIL_000932_0002ENSMUSG00000030551ENSMUST00000032768ENSMUST00000089565ENSMUSG00000101559ENSMUST00000189033
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000185551 ENST00000394166 18.878±0.00 20.084±0.00 7.017±0.00 1.192±0.96 4.415±3.51 11.543±0.00 1.929±1.79 9.162±7.94 1.994±0.71 9.091±7.22 2.652±2.48 21.959±20.59 7.060±3.52 11.965±9.90
ENST00000394171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421109 21.112±0.00 35.457±0.00 N/A 1.631±0.48 10.111±2.14 13.320±9.64 0.401±0.00 15.073±11.59 3.890±1.25 3.269±0.00 0.796±0.00 27.871±21.14 22.616±9.30 28.806±18.06
ENST00000453270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.984±0.00 7.485±0.00
ENST00000559679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185594 ENST00000328504 N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A 0.064±0.00 0.057±0.00 101.168±33.38
ENST00000558553 0.198±0.00 0.367±0.00 N/A N/A 0.685±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 33.110±0.00
ENST00000560327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A
ENST00000561002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214424 ENST00000533428 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 0.330±0.25
ENSG00000222617 ENST00000410685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00
ENSG00000223120 ENST00000411188 0.248±0.00 0.051±0.00 N/A 0.162±0.00 0.051±0.00 0.286±0.00 0.225±0.10 N/A N/A N/A N/A N/A N/A 0.185±0.00
ENSG00000242295 ENST00000465747 0.332±0.00 0.263±0.00 N/A 0.045±0.00 0.044±0.00 N/A N/A N/A N/A 0.041±0.00 N/A 0.136±0.01 N/A 0.374±0.00
ENSG00000247809 ENST00000502125 N/A N/A N/A 0.065±0.04 0.950±0.00 N/A N/A N/A 1.684±0.00 N/A N/A 0.123±0.00 0.384±0.00 0.450±0.00
ENST00000557863 1.168±0.00 N/A N/A N/A 0.895±0.00 N/A N/A 3.083±0.00 0.161±0.00 N/A 0.245±0.00 N/A N/A 3.097±0.00
ENST00000558929 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.754±0.00 N/A N/A 0.614±0.00 N/A
ENST00000558935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.791±0.00 N/A
ENST00000559505 N/A N/A N/A N/A N/A N/A N/A N/A 1.421±0.00 N/A 0.097±0.00 N/A N/A N/A
ENST00000560010 N/A N/A N/A N/A 1.049±0.00 N/A N/A N/A N/A N/A N/A 0.261±0.00 0.442±0.00 N/A
ENST00000560170 N/A N/A N/A 0.285±0.00 N/A N/A 0.654±0.20 N/A N/A 1.571±0.00 N/A N/A 1.167±0.95 N/A
ENST00000560395 N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A 1.107±0.00 N/A
ENST00000560800 N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A N/A N/A N/A N/A
ENST00000561344 N/A N/A N/A N/A 0.365±0.00 0.285±0.00 0.391±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000561402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.507±0.07 1.916±0.00
ENST00000616032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616912 N/A N/A N/A N/A 0.527±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618776 N/A N/A N/A 0.066±0.00 N/A N/A N/A 0.926±0.00 0.048±0.00 N/A N/A N/A N/A N/A
ENST00000620029 N/A 0.947±0.00 N/A 0.112±0.00 N/A N/A N/A N/A N/A 0.396±0.00 N/A 1.686±1.54 0.071±0.00 0.805±0.00
ENSG00000250825 ENST00000505622 N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A 0.049±0.00
ENSG00000259275 ENST00000558382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.250±0.00 0.222±0.00 0.490±0.24 N/A
ENST00000558499 0.250±0.00 0.947±0.00 0.455±0.00 0.064±0.00 0.171±0.01 0.053±0.05 0.054±0.02 0.230±0.00 0.059±0.00 0.212±0.01 0.013±0.00 0.941±0.63 0.096±0.03 0.230±0.03
ENSG00000259282 ENST00000558722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.163±0.00
ENST00000560888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259312 ENST00000559214 N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.207±0.00
ENSG00000259340 ENST00000559699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.127±0.00
ENSG00000259534 ENST00000560586 N/A 0.171±0.00 N/A N/A N/A N/A N/A 0.250±0.03 N/A N/A N/A 0.198±0.06 N/A 0.157±0.05
ENSG00000259614 ENST00000559595 0.016±0.00 0.216±0.00 N/A 0.071±0.00 0.251±0.08 0.435±0.00 0.143±0.00 0.098±0.00 0.578±0.00 0.492±0.46 N/A 0.410±0.18 0.064±0.00 0.212±0.00
ENSG00000274079 ENST00000616811 0.310±0.00 0.636±0.00 N/A 0.357±0.00 0.728±0.00 0.244±0.00 0.186±0.00 0.854±0.00 0.173±0.00 0.425±0.00 0.346±0.00 2.790±0.00 N/A 0.299±0.00
ENSG00000275322 ENST00000617440 0.356±0.00 0.760±0.00 N/A 0.073±0.03 0.388±0.10 0.204±0.13 0.102±0.00 0.604±0.46 0.174±0.02 N/A 0.158±0.00 0.604±0.49 0.338±0.05 0.317±0.13
ENSG00000275443 ENST00000619812 0.071±0.00 0.253±0.00 0.293±0.00 0.019±0.00 N/A 0.112±0.00 0.033±0.00 0.126±0.00 N/A 0.130±0.00 0.206±0.00 0.235±0.08 0.033±0.00 0.382±0.04
ENSG00000279645 ENST00000624299 N/A 0.265±0.00 N/A 0.019±0.00 0.063±0.00 N/A 0.094±0.00 N/A 0.335±0.33 1.055±0.00 0.026±0.00 1.440±0.00 N/A N/A
ENSG00000280291 ENST00000623393 0.040±0.00 0.194±0.00 0.694±0.00 0.052±0.02 0.398±0.32 0.060±0.05 0.096±0.04 0.068±0.02 0.127±0.09 0.155±0.14 N/A 0.074±0.10 0.025±0.01 0.065±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030551 ENSMUST00000032768 15.153±8.71 32.839±3.82 13.119±0.63 14.501±9.37 8.399±4.52 11.767±1.63 1.967±0.84 16.204±3.45 3.519±0.63 18.844±2.22 1.902±0.41 50.793±24.73 3.826±0.98 1.067±0.47
ENSMUST00000089565 22.169±17.33 56.235±0.80 24.305±5.88 17.916±12.77 5.512±1.31 N/A 3.339±0.53 20.722±3.57 3.635±1.44 18.229±0.98 1.269±0.17 25.108±12.79 8.761±7.42 2.200±0.56
ENSMUSG00000101559 ENSMUST00000189033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.335±0.00 N/A

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