C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 2, group F, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089565 Nr2f2-002 ENSMUSG00000030551 10090 - 7:70354439-70366735 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089565
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089565 22.169±17.33 56.235±0.80 24.305±5.88 17.916±12.77 5.512±1.31 3.339±0.53 20.722±3.57 3.635±1.44 18.229±0.98 1.269±0.17 25.108±12.79 8.761±7.42 2.200±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007O7 CIL_0007O7_0003 UCNEbase 7:69097096-72048391
CIL_000932 CIL_000932_0002 VISTA 7:69817148-70419432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IMP in utero embryonic development
GO:0001764 IDA neuron migration
GO:0001893 IMP maternal placenta development
GO:0003677 IDA DNA binding
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007519 IMP skeletal muscle tissue development
GO:0009566 IMP fertilization
GO:0009952 IMP anterior/posterior pattern specification
GO:0009956 IMP radial pattern formation
GO:0030522 IEA intracellular receptor signaling pathway
GO:0030900 IDA forebrain development
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA sequence-specific DNA binding
GO:0048514 IMP blood vessel morphogenesis
GO:0060173 IMP limb development
GO:0060674 IMP placenta blood vessel development
GO:0060707 IMP trophoblast giant cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000059976 nr2f2-201 protein_coding Danio_rerio 0 647
ENSDART00000130163 nr2f2-001 protein_coding Danio_rerio 0 647
ENST00000327111 NR2F1-001 protein_coding Homo_sapiens 0 782
ENST00000394166 NR2F2-001 protein_coding Homo_sapiens 0 1474
ENST00000394171 NR2F2-201 protein_coding Homo_sapiens 0 1474
ENST00000421109 NR2F2-002 protein_coding Homo_sapiens 0 2098
ENST00000453270 NR2F2-003 protein_coding Homo_sapiens 0 1474
ENST00000506162 NR2F1-005 processed_transcript Homo_sapiens 0 226
ENST00000559679 NR2F2-004 protein_coding Homo_sapiens 0 440
ENST00000615873 NR2F1-201 protein_coding Homo_sapiens 0 782

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