C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394821 SLC6A4-001 ENSG00000108576 9606 - 17:30198495-30235698 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394821
Transcript ID Bladder Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394821 0.146±0.00 0.162±0.00 0.082±0.00 0.143±0.00 0.136±0.00 6.635±4.13 0.086±0.00 0.355±0.32 10.744±4.12 0.282±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004GG CIL_0004GG_0002 CGP 17:30194319-30292056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005335 IEA serotonin:sodium symporter activity
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021195 Slc6a4-001 protein_coding Mus_musculus 0 2198
ENSMUST00000108402 Slc6a4-003 protein_coding Mus_musculus 0 2198
ENSMUST00000129572 Slc6a4-002 protein_coding Mus_musculus 0 486

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