C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394945 SPOCK1-001 ENSG00000152377 9606 - 5:136975298-137499348 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394945
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394945 37.015±0.00 0.459±0.00 0.866±0.00 37.848±29.92 2.617±0.71 16.926±0.00 2.557±2.09 11.322±0.00 2.749±0.00 0.473±0.00 10.407±0.00 0.730±0.00 3.855±2.75 7.321±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005P0 CIL_0005P0_0001 CGP 5:136213320-137598379
CIL_0005P1 CIL_0005P1_0001 CGP 5:136975298-137736090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 NAS regulation of cell growth
GO:0001764 ISS neuron migration
GO:0004867 NAS serine-type endopeptidase inhibitor activity
GO:0004869 IDA cysteine-type endopeptidase inhibitor activity
GO:0005509 IDA:IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0005737 ISS cytoplasm
GO:0007155 NAS cell adhesion
GO:0007165 IEA signal transduction
GO:0007399 NAS nervous system development
GO:0008191 IDA metalloendopeptidase inhibitor activity
GO:0010812 IDA negative regulation of cell-substrate adhesion
GO:0010951 IDA negative regulation of endopeptidase activity
GO:0010977 IDA negative regulation of neuron projection development
GO:0014069 NAS postsynaptic density
GO:0016528 ISS sarcoplasm
GO:0021953 ISS central nervous system neuron differentiation
GO:0022008 ISS neurogenesis
GO:0031594 ISS neuromuscular junction
GO:0033268 ISS node of Ranvier

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186271 Spock1-005 protein_coding Mus_musculus 0 2076
ENSMUST00000185502 Spock1-002 protein_coding Mus_musculus 0 2028
ENSMUST00000172326 Spock1-201 protein_coding Mus_musculus 0 1690
ENSMUST00000185905 Spock1-004 retained_intron Mus_musculus 0 1312
ENSMUST00000187852 Spock1-001 protein_coding Mus_musculus 0 1312
ENSMUST00000189373 Spock1-003 protein_coding Mus_musculus 0 1260

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