C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 1A (brain)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395155 STX1A-003 ENSG00000106089 9606 - 7:73700827-73719631 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENST00000395155
Transcript ID Breast
ENST00000395155 2.860±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005576 IEA extracellular region
GO:0005886 TAS plasma membrane
GO:0006112 TAS energy reserve metabolic process
GO:0006886 IEA intracellular protein transport
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0014047 TAS glutamate secretion
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030054 IEA cell junction
GO:0031201 TAS SNARE complex
GO:0032940 IDA secretion by cell
GO:0043005 IDA neuron projection
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0050796 TAS regulation of insulin secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150838 Stx1a-003 nonsense_mediated_decay Mus_musculus 0 941
ENSMUST00000005509 Stx1a-001 protein_coding Mus_musculus 0 926
ENSMUST00000133812 Stx1a-005 processed_transcript Mus_musculus 0 732
ENSMUST00000156626 Stx1a-002 retained_intron Mus_musculus 0 658
ENSMUST00000144198 Stx1a-004 processed_transcript Mus_musculus 0 610

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