C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 1A (brain)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150838 Stx1a-003 ENSMUSG00000007207 10090 + 5:135023560-135051100 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000150838
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000150838 3.490±1.20 3.747±0.54 4.052±0.54 5.571±0.00 2.328±0.73 1.417±0.55 0.842±0.31 1.010±0.35 1.632±0.83 2.605±0.56 0.373±0.16 6.831±2.30 1.621±1.03 1.803±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000344 CIL_000344_0002 CGP 5:135023482-135064959

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IDA SNARE binding
GO:0001948 ISO glycoprotein binding
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0017156 IMP calcium ion-dependent exocytosis
GO:0017157 IEA regulation of exocytosis
GO:0019855 IMP calcium channel inhibitor activity
GO:0030672 IDA synaptic vesicle membrane
GO:0043005 ISO neuron projection
GO:0070032 ISO synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex
GO:0070044 IDA synaptobrevin 2-SNAP-25-syntaxin-1a complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215095 STX1B-001 protein_coding Homo_sapiens 0 494
ENST00000222812 STX1A-001 protein_coding Homo_sapiens 0 959
ENST00000395154 STX1A-010 protein_coding Homo_sapiens 0 959
ENST00000395155 STX1A-003 protein_coding Homo_sapiens 0 941
ENST00000395156 STX1A-002 protein_coding Homo_sapiens 0 957
ENST00000461441 STX1A-013 retained_intron Homo_sapiens 0 370
ENST00000462135 STX1A-007 retained_intron Homo_sapiens 0 492
ENST00000470878 STX1A-004 processed_transcript Homo_sapiens 0 872
ENST00000480126 STX1A-011 processed_transcript Homo_sapiens 0 773
ENST00000484736 STX1A-012 processed_transcript Homo_sapiens 0 374
ENST00000491427 STX1A-008 retained_intron Homo_sapiens 0 545
ENST00000491645 STX1A-014 processed_transcript Homo_sapiens 0 331
ENST00000494245 STX1A-006 retained_intron Homo_sapiens 0 433
ENST00000496216 STX1A-005 processed_transcript Homo_sapiens 0 695
ENST00000497980 STX1A-009 retained_intron Homo_sapiens 0 305
ENST00000561836 STX1B-004 retained_intron Homo_sapiens 1.99993e-41 172
ENST00000565419 STX1B-003 protein_coding Homo_sapiens 0 494
ENST00000569638 STX1B-002 protein_coding Homo_sapiens 0 340

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