C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 1A (brain)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005509 Stx1a-001 ENSMUSG00000007207 10090 + 5:135023482-135051100 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverMuscleENSMUST00000005509
Transcript ID Adrenal Brain Colon Heart Kidney Liver Muscle
ENSMUST00000005509 2.307±0.00 45.292±23.52 0.988±0.00 0.254±0.00 0.282±0.06 0.067±0.00 0.108±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000344 CIL_000344_0002 CGP 5:135023482-135064959

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IDA SNARE binding
GO:0001948 ISO glycoprotein binding
GO:0001956 IGI positive regulation of neurotransmitter secretion
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0008021 IDA synaptic vesicle
GO:0009629 IEA response to gravity
GO:0010807 IGI regulation of synaptic vesicle priming
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016081 IEA synaptic vesicle docking involved in exocytosis
GO:0017022 IEA myosin binding
GO:0017156 IMP calcium ion-dependent exocytosis
GO:0017157 IEA regulation of exocytosis
GO:0019855 IMP calcium channel inhibitor activity
GO:0019904 IEA protein domain specific binding
GO:0030054 IEA cell junction
GO:0030141 IEA secretory granule
GO:0030672 IDA synaptic vesicle membrane
GO:0030674 IEA protein binding, bridging
GO:0031201 ISS SNARE complex
GO:0032028 IEA myosin head/neck binding
GO:0032940 IEA secretion by cell
GO:0042641 IEA actomyosin
GO:0043005 ISO neuron projection
GO:0043008 IEA ATP-dependent protein binding
GO:0043229 IEA intracellular organelle
GO:0043234 IEA protein complex
GO:0045921 IEA positive regulation of exocytosis
GO:0046982 IEA protein heterodimerization activity
GO:0047485 IEA protein N-terminus binding
GO:0048306 IEA calcium-dependent protein binding
GO:0070032 ISO synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex
GO:0070033 IEA synaptobrevin 2-SNAP-25-syntaxin-1a-complexin II complex
GO:0070044 IDA synaptobrevin 2-SNAP-25-syntaxin-1a complex
GO:2000463 IGI positive regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215095 STX1B-001 protein_coding Homo_sapiens 0 643
ENST00000222812 STX1A-001 protein_coding Homo_sapiens 0 1304
ENST00000395154 STX1A-010 protein_coding Homo_sapiens 0 965
ENST00000395155 STX1A-003 protein_coding Homo_sapiens 0 926
ENST00000395156 STX1A-002 protein_coding Homo_sapiens 0 966
ENST00000461441 STX1A-013 retained_intron Homo_sapiens 0 370
ENST00000462135 STX1A-007 retained_intron Homo_sapiens 0 508
ENST00000470878 STX1A-004 processed_transcript Homo_sapiens 0 872
ENST00000480126 STX1A-011 processed_transcript Homo_sapiens 0 472
ENST00000484736 STX1A-012 processed_transcript Homo_sapiens 0 346
ENST00000491427 STX1A-008 retained_intron Homo_sapiens 0 472
ENST00000491645 STX1A-014 processed_transcript Homo_sapiens 0 303
ENST00000494245 STX1A-006 retained_intron Homo_sapiens 0 433
ENST00000496216 STX1A-005 processed_transcript Homo_sapiens 0 641
ENST00000497980 STX1A-009 retained_intron Homo_sapiens 0 394
ENST00000561836 STX1B-004 retained_intron Homo_sapiens 1.99993e-41 172
ENST00000565419 STX1B-003 protein_coding Homo_sapiens 0 590
ENST00000569638 STX1B-002 protein_coding Homo_sapiens 0 492

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