C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 1A (brain)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156626 Stx1a-002 ENSMUSG00000007207 10090 + 5:135041060-135051099 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverMuscleOvaryPlacentaTestisENSMUST00000156626
Transcript ID Adrenal Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000156626 5.444±1.07 0.554±0.05 0.362±0.11 0.320±0.05 8.618±4.35 0.273±0.00 0.632±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000344 CIL_000344_0002 CGP 5:135023482-135064959

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215095 STX1B-001 protein_coding Homo_sapiens 0 372
ENST00000222812 STX1A-001 protein_coding Homo_sapiens 0 647
ENST00000395154 STX1A-010 protein_coding Homo_sapiens 0 645
ENST00000395155 STX1A-003 protein_coding Homo_sapiens 0 658
ENST00000395156 STX1A-002 protein_coding Homo_sapiens 0 643
ENST00000461441 STX1A-013 retained_intron Homo_sapiens 0 370
ENST00000470878 STX1A-004 processed_transcript Homo_sapiens 0 643
ENST00000480126 STX1A-011 processed_transcript Homo_sapiens 0 773
ENST00000484736 STX1A-012 processed_transcript Homo_sapiens 0 374
ENST00000491427 STX1A-008 retained_intron Homo_sapiens 0 545
ENST00000491645 STX1A-014 processed_transcript Homo_sapiens 0 331
ENST00000494245 STX1A-006 retained_intron Homo_sapiens 0 436
ENST00000496216 STX1A-005 processed_transcript Homo_sapiens 0 699
ENST00000497980 STX1A-009 retained_intron Homo_sapiens 0 305
ENST00000565419 STX1B-003 protein_coding Homo_sapiens 0 372
ENST00000569638 STX1B-002 protein_coding Homo_sapiens 0 340

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