C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395613 AC002056.3-001 ENSG00000213683 9606 - 22:50754675-50755434 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaTestisENST00000395613
Transcript ID Brain Liver Ovary Placenta Testis
ENST00000395613 0.058±0.00 0.017±0.00 0.042±0.02 0.032±0.00 0.140±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066R CIL_00066R_0001 CGP 22:50738196-50783663

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153609 Snrpa1-001 protein_coding Mus_musculus 0 1002
ENSMUST00000139082 Snrpa1-003 retained_intron Mus_musculus 0 584
ENSMUST00000032723 Snrpa1-002 nonsense_mediated_decay Mus_musculus 0 582
ENSMUST00000123157 Snrpa1-004 processed_transcript Mus_musculus 0 481

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