C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide A'
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153609 Snrpa1-001 ENSMUSG00000030512 10090 + 7:66060338-66074582 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000153609
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153609 2.981±0.95 1.270±0.27 10.898±0.67 17.388±3.82 2.418±0.72 2.162±0.57 3.430±0.54 3.015±0.80 16.569±15.94 2.565±1.05 5.664±0.76 7.999±13.69 45.762±37.13 4.406±1.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CP CIL_0007CP_0002 CGP 7:65861734-66074582
CIL_0007CO CIL_0007CO_0002 CGP 7:66060299-66089412

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254193 SNRPA1-001 protein_coding Homo_sapiens 0 1140
ENST00000272567 RP11-395L14.17-001 processed_pseudogene Homo_sapiens 0 1003
ENST00000394082 SNRPA1-004 processed_transcript Homo_sapiens 0 324
ENST00000395613 AC002056.3-001 processed_pseudogene Homo_sapiens 0 1002
ENST00000540017 SNRPA1-003 processed_transcript Homo_sapiens 0 307
ENST00000558020 SNRPA1-009 processed_transcript Homo_sapiens 0 429
ENST00000558036 SNRPA1-002 retained_intron Homo_sapiens 0 640
ENST00000558059 SNRPA1-008 retained_intron Homo_sapiens 0 508
ENST00000559309 SNRPA1-015 nonsense_mediated_decay Homo_sapiens 0 617
ENST00000559686 SNRPA1-013 protein_coding Homo_sapiens 0 553
ENST00000560383 SNRPA1-007 retained_intron Homo_sapiens 1e-24 117
ENST00000560433 SNRPA1-005 retained_intron Homo_sapiens 0 375
ENST00000560496 SNRPA1-011 protein_coding Homo_sapiens 0 920
ENST00000560856 SNRPA1-012 processed_transcript Homo_sapiens 0 429
ENST00000560987 SNRPA1-010 processed_transcript Homo_sapiens 0 488
ENST00000561187 SNRPA1-006 retained_intron Homo_sapiens 0 327

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