C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: small nuclear ribonucleoprotein polypeptide A'
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123157 Snrpa1-004 ENSMUSG00000030512 10090 + 7:66060299-66069526 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000123157
Transcript ID Breast
ENSMUST00000123157 4.695±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CP CIL_0007CP_0002 CGP 7:65861734-66074582
CIL_0007CO CIL_0007CO_0002 CGP 7:66060299-66089412

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254193 SNRPA1-001 protein_coding Homo_sapiens 0 505
ENST00000272567 RP11-395L14.17-001 processed_pseudogene Homo_sapiens 0 488
ENST00000395613 AC002056.3-001 processed_pseudogene Homo_sapiens 0 481
ENST00000558020 SNRPA1-009 processed_transcript Homo_sapiens 0 316
ENST00000558036 SNRPA1-002 retained_intron Homo_sapiens 0 505
ENST00000558059 SNRPA1-008 retained_intron Homo_sapiens 0 505
ENST00000559309 SNRPA1-015 nonsense_mediated_decay Homo_sapiens 0 505
ENST00000560496 SNRPA1-011 protein_coding Homo_sapiens 0 507
ENST00000560856 SNRPA1-012 processed_transcript Homo_sapiens 0 316
ENST00000560987 SNRPA1-010 processed_transcript Homo_sapiens 0 486
ENST00000561187 SNRPA1-006 retained_intron Homo_sapiens 0 209

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