C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide A'
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139082 Snrpa1-003 ENSMUSG00000030512 10090 + 7:66060564-66071612 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139082
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139082 1.026±0.45 0.446±0.00 1.114±0.00 3.287±1.01 0.810±0.20 0.566±0.00 0.624±0.06 0.468±0.01 3.256±0.81 0.863±0.22 0.649±0.08 1.305±0.82 1.150±0.00 1.196±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CP CIL_0007CP_0002 CGP 7:65861734-66074582
CIL_0007CO CIL_0007CO_0002 CGP 7:66060299-66089412

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254193 SNRPA1-001 protein_coding Homo_sapiens 0 619
ENST00000272567 RP11-395L14.17-001 processed_pseudogene Homo_sapiens 0 595
ENST00000394082 SNRPA1-004 processed_transcript Homo_sapiens 0 228
ENST00000395613 AC002056.3-001 processed_pseudogene Homo_sapiens 0 584
ENST00000540017 SNRPA1-003 processed_transcript Homo_sapiens 0 228
ENST00000558020 SNRPA1-009 processed_transcript Homo_sapiens 0 429
ENST00000558036 SNRPA1-002 retained_intron Homo_sapiens 0 819
ENST00000558059 SNRPA1-008 retained_intron Homo_sapiens 0 514
ENST00000559309 SNRPA1-015 nonsense_mediated_decay Homo_sapiens 0 617
ENST00000559686 SNRPA1-013 protein_coding Homo_sapiens 0 230
ENST00000560383 SNRPA1-007 retained_intron Homo_sapiens 1e-24 117
ENST00000560433 SNRPA1-005 retained_intron Homo_sapiens 0 819
ENST00000560496 SNRPA1-011 protein_coding Homo_sapiens 0 507
ENST00000560856 SNRPA1-012 processed_transcript Homo_sapiens 0 429
ENST00000560987 SNRPA1-010 processed_transcript Homo_sapiens 0 488
ENST00000561187 SNRPA1-006 retained_intron Homo_sapiens 0 322

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