C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide A'
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032723 Snrpa1-002 ENSMUSG00000030512 10090 + 7:66060544-66074580 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032723
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032723 2.996±0.67 4.931±1.79 3.148±0.00 7.259±2.20 2.336±0.95 4.325±1.60 3.078±0.54 3.502±1.08 6.065±3.37 4.066±1.13 1.427±0.30 4.259±1.35 4.595±0.00 8.775±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CP CIL_0007CP_0002 CGP 7:65861734-66074582
CIL_0007CO CIL_0007CO_0002 CGP 7:66060299-66089412

Gene Ontology

GO IDEvidence TypeGO Description
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254193 SNRPA1-001 protein_coding Homo_sapiens 0 617
ENST00000272567 RP11-395L14.17-001 processed_pseudogene Homo_sapiens 0 593
ENST00000394082 SNRPA1-004 processed_transcript Homo_sapiens 0 512
ENST00000395613 AC002056.3-001 processed_pseudogene Homo_sapiens 0 582
ENST00000540017 SNRPA1-003 processed_transcript Homo_sapiens 0 438
ENST00000558020 SNRPA1-009 processed_transcript Homo_sapiens 0 429
ENST00000558036 SNRPA1-002 retained_intron Homo_sapiens 0 617
ENST00000558059 SNRPA1-008 retained_intron Homo_sapiens 0 507
ENST00000559309 SNRPA1-015 nonsense_mediated_decay Homo_sapiens 0 990
ENST00000559686 SNRPA1-013 protein_coding Homo_sapiens 0 228
ENST00000560383 SNRPA1-007 retained_intron Homo_sapiens 1e-24 117
ENST00000560433 SNRPA1-005 retained_intron Homo_sapiens 0 374
ENST00000560496 SNRPA1-011 protein_coding Homo_sapiens 0 505
ENST00000560856 SNRPA1-012 processed_transcript Homo_sapiens 0 429
ENST00000560987 SNRPA1-010 processed_transcript Homo_sapiens 0 488
ENST00000561187 SNRPA1-006 retained_intron Homo_sapiens 0 322

Loading