C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterol regulatory element binding transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134660 Srebf1-006 ENSMUSG00000020538 10090 - 11:60199089-60207188 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungMuscleOvaryENSMUST00000134660
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Muscle Ovary
ENSMUST00000134660 41.070±7.65 55.969±12.74 21.147±8.00 86.383±34.49 13.826±1.99 10.572±4.10 25.642±15.89 16.621±3.11 3.615±0.00 19.737±4.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0002 VISTA 11:59693037-60296757
CIL_0000NM CIL_0000NM_0002 CGP 11:59970614-60199197
CIL_00003U CIL_00003U_0003 CGP 11:60105013-60222581
CIL_00003N CIL_00003N_0003 CGP 11:60199089-60352905

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261646 SREBF1-002 protein_coding Homo_sapiens 0 2449
ENST00000353383 RAI1-001 protein_coding Homo_sapiens 2e-18 100
ENST00000355815 SREBF1-003 protein_coding Homo_sapiens 0 2449
ENST00000395751 SREBF1-018 nonsense_mediated_decay Homo_sapiens 0 1731
ENST00000395756 SREBF1-005 nonsense_mediated_decay Homo_sapiens 0 1731
ENST00000395757 SREBF1-004 protein_coding Homo_sapiens 0 2337
ENST00000469356 SREBF1-010 retained_intron Homo_sapiens 0 394
ENST00000470247 SREBF1-007 retained_intron Homo_sapiens 0 359
ENST00000471445 SREBF1-011 retained_intron Homo_sapiens 0 442
ENST00000478616 SREBF1-015 protein_coding Homo_sapiens 0 370
ENST00000485080 SREBF1-016 nonsense_mediated_decay Homo_sapiens 2e-26 124
ENST00000486311 SREBF1-014 protein_coding Homo_sapiens 0 268
ENST00000580540 SREBF1-019 retained_intron Homo_sapiens 0 215

Loading