C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396594 GNE-003 ENSG00000159921 9606 - 9:36214441-36277056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLiverLungMuscleOvaryPlacentaENST00000396594
Transcript ID Adrenal Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENST00000396594 2.633±0.00 1.093±0.00 4.761±2.78 5.301±1.28 9.808±2.70 10.742±10.08 1.518±0.00 1.390±0.96 7.106±1.29 3.733±1.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K2 CIL_0006K2_0001 CGP 9:36169394-36304781
CIL_0006K3 CIL_0006K3_0001 CGP 9:36190856-36304781
CIL_0006K4 CIL_0006K4_0001 CGP 9:36214441-36487548

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004553 IEA hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005737 TAS cytoplasm
GO:0005829 IEA cytosol
GO:0006045 IEA N-acetylglucosamine biosynthetic process
GO:0006047 IEA UDP-N-acetylglucosamine metabolic process
GO:0006054 TAS N-acetylneuraminate metabolic process
GO:0007155 TAS cell adhesion
GO:0008761 IEA UDP-N-acetylglucosamine 2-epimerase activity
GO:0009384 IEA N-acylmannosamine kinase activity
GO:0046835 IEA carbohydrate phosphorylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030201 Gne-001 protein_coding Mus_musculus 0 2591
ENSMUST00000102936 Gne-002 protein_coding Mus_musculus 0 2573
ENSMUST00000172533 Gne-008 nonsense_mediated_decay Mus_musculus 0 2516
ENSMUST00000174522 Gne-007 nonsense_mediated_decay Mus_musculus 0 1759
ENSMUST00000173234 Gne-009 protein_coding Mus_musculus 0 1711
ENSMUST00000173274 Gne-011 protein_coding Mus_musculus 0 1040
ENSMUST00000172514 Gne-014 retained_intron Mus_musculus 0 750
ENSMUST00000173976 Gne-013 retained_intron Mus_musculus 0 612
ENSMUST00000144985 Gne-003 protein_coding Mus_musculus 0 597
ENSMUST00000133709 Gne-006 nonsense_mediated_decay Mus_musculus 0 484
ENSMUST00000173383 Gne-010 protein_coding Mus_musculus 0 442
ENSMUST00000128439 Gne-004 protein_coding Mus_musculus 0 303
ENSMUST00000140724 Gne-005 protein_coding Mus_musculus 0 296
ENSMUST00000173569 Gne-012 processed_transcript Mus_musculus 0 285

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