C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S4, X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033683 Rps4x-001 ENSMUSG00000031320 10090 - X:102184941-102189394 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033683
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033683 292.706±126.66 32.815±2.36 903.252±45.95 199.758±119.73 281.409±101.63 165.462±24.39 170.131±7.02 199.859±32.99 441.657±379.12 240.097±29.64 216.810±15.70 297.094±326.75 428.914±252.42 14.886±6.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RO CIL_0006RO_0002 CGP X:102141716-102189394
CIL_0000YL CIL_0000YL_0003 CGP X:102184941-102252181

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005840 ISS ribosome
GO:0005844 IEA polysome
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0007275 IEA multicellular organismal development
GO:0008284 IEA positive regulation of cell proliferation
GO:0015935 ISA small ribosomal subunit
GO:0016020 IEA membrane
GO:0019843 IEA rRNA binding
GO:0030529 ISS ribonucleoprotein complex
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0044822 IEA poly(A) RNA binding
GO:0045727 IEA positive regulation of translation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128917 rps4x-001 protein_coding Danio_rerio 0 699
ENSDART00000007957 rps4x-003 retained_intron Danio_rerio 0 466
ENST00000316084 RPS4X-001 protein_coding Homo_sapiens 0 1138
ENST00000373626 RPS4X-002 protein_coding Homo_sapiens 0 514
ENST00000398541 RPS4XP3-001 processed_pseudogene Homo_sapiens 0 507
ENST00000402039 RPS4XP8-001 processed_pseudogene Homo_sapiens 0 800
ENST00000405151 RPS4XP9-001 processed_pseudogene Homo_sapiens 0 745
ENST00000406274 RPS4XP7-001 processed_pseudogene Homo_sapiens 0 878
ENST00000419038 RPS4XP5-001 transcribed_processed_pseudogene Homo_sapiens 0 763
ENST00000427198 RPS4XP16-001 transcribed_processed_pseudogene Homo_sapiens 0 902
ENST00000443195 RPS4XP4-001 processed_pseudogene Homo_sapiens 0 671
ENST00000446897 RPS4XP11-001 processed_pseudogene Homo_sapiens 0 870
ENST00000458402 RPS4XP2-001 processed_pseudogene Homo_sapiens 0 961
ENST00000460237 RPS4XP19-001 processed_pseudogene Homo_sapiens 0 649
ENST00000465034 RPS4XP10-001 processed_pseudogene Homo_sapiens 0 654
ENST00000470671 RPS4X-004 processed_transcript Homo_sapiens 0 329
ENST00000477670 RPS4XP6-001 processed_pseudogene Homo_sapiens 0 896
ENST00000479057 RPS4XP17-001 processed_pseudogene Homo_sapiens 0 691
ENST00000482189 RPS4XP1-001 processed_pseudogene Homo_sapiens 0 896
ENST00000483219 RPS4XP13-001 processed_pseudogene Homo_sapiens 0 872
ENST00000486733 RPS4X-003 processed_transcript Homo_sapiens 0 536
ENST00000492695 RPS4X-005 processed_transcript Homo_sapiens 1e-18 97
ENST00000493072 RPS4XP14-001 processed_pseudogene Homo_sapiens 0 821
ENST00000505751 RPS4XP20-001 processed_pseudogene Homo_sapiens 0 726
ENST00000508013 RP11-697N18.1-001 unprocessed_pseudogene Homo_sapiens 0 791
ENST00000595905 RPS4XP16-003 processed_transcript Homo_sapiens 0 760
ENST00000596904 RPS4XP16-002 processed_transcript Homo_sapiens 0 560
ENST00000603814 RPS4XP21-001 processed_pseudogene Homo_sapiens 0 758

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