C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class II, DQ beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399079 HLA-DQB1-004 ENSG00000179344 9606 - 6:32659467-32666664 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungOvaryPlacentaENST00000399079
Transcript ID Brain Breast Colon Heart Liver Lung Ovary Placenta
ENST00000399079 1.097±0.00 1.614±0.00 0.795±0.00 3.635±0.00 0.842±0.49 29.908±0.00 1.241±0.00 3.569±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PL CIL_0001PL_0006 CGP 6:32628179-32668383
CIL_0002XS CIL_0002XS_0007 CGP 6:32659467-32747215

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002504 IEA antigen processing and presentation of peptide or polysaccharide antigen via MHC class II
GO:0005515 IEA protein binding
GO:0006955 IEA immune response
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019882 IEA antigen processing and presentation
GO:0042613 IEA MHC class II protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040828 H2-Ab1-001 protein_coding Mus_musculus 0 477
ENSMUST00000173103 H2-Ab1-003 retained_intron Mus_musculus 0 274

Loading