C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: smoothelin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399154 SMTNL1-201 ENSG00000214872 9606 + 11:57542643-57550274 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartKidneyLiverLungOvaryPlacentaENST00000399154
Transcript ID Bladder Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000399154 0.023±0.00 0.185±0.00 0.014±0.00 0.127±0.00 0.126±0.00 0.125±0.09 0.100±0.00 0.034±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0043292 IDA contractile fiber
GO:0045907 ISS positive regulation of vasoconstriction
GO:0045908 ISS negative regulation of vasodilation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028471 Smtnl1-001 protein_coding Mus_musculus 0 837
ENSMUST00000170588 Smtn-201 protein_coding Mus_musculus 6.00036e-42 176
ENSMUST00000144635 Smtn-005 processed_transcript Mus_musculus 6.00036e-42 176
ENSMUST00000020721 Smtn-001 protein_coding Mus_musculus 6.00036e-42 176
ENSMUST00000154861 Smtn-004 processed_transcript Mus_musculus 6.00036e-42 176
ENSMUST00000020718 Smtn-002 protein_coding Mus_musculus 6.00036e-42 176
ENSMUST00000075118 Smtn-003 protein_coding Mus_musculus 1e-28 132
ENSMUST00000110011 Smtn-009 protein_coding Mus_musculus 1e-28 132

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