C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 20 open reading frame 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399672 C20orf27-005 ENSG00000101220 9606 - 20:3753508-3767781 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399672
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399672 2.938±0.00 3.845±0.00 2.404±1.23 3.716±3.29 4.438±4.19 0.270±0.00 2.075±0.00 0.234±0.00 2.625±0.00 0.904±0.00 2.906±2.14 3.128±0.02 3.320±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033D CIL_00033D_0001 CGP 20:3753508-3781448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103188 1700037H04Rik-001 protein_coding Mus_musculus 0 832
ENSMUST00000028800 1700037H04Rik-002 protein_coding Mus_musculus 0 656
ENSMUST00000136838 1700037H04Rik-004 retained_intron Mus_musculus 0 573
ENSMUST00000184535 1700037H04Rik-003 nonsense_mediated_decay Mus_musculus 0 573
ENSMUST00000133602 1700037H04Rik-005 protein_coding Mus_musculus 0 551
ENSMUST00000184121 1700037H04Rik-006 nonsense_mediated_decay Mus_musculus 0 429

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