C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 3 pseudogene 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000400214 HMGB3P7-001 ENSG00000215399 9606 + 13:101801878-101802488 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLungOvaryPlacentaTestisENST00000400214
Transcript ID Adrenal Brain Breast Heart Lung Ovary Placenta Testis
ENST00000400214 0.022±0.00 0.282±0.00 0.151±0.11 0.074±0.03 0.090±0.00 0.094±0.04 0.046±0.03 0.057±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WJ CIL_0000WJ_0001 CGP 13:101452593-102402457

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078030 Gm6104-201 protein_coding Mus_musculus 0 363
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 361
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 361
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 361
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 361
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 351
ENSMUST00000176139 Gm18367-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000120072 Gm5060-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000123100 Hmgb3-005 protein_coding Mus_musculus 0 289

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