C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11805
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121238 Gm11805-001 ENSMUSG00000083186 10090 - 4:3720427-3721026 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000121238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121238 0.194±0.07 0.357±0.00 0.048±0.00 0.176±0.00 0.674±0.35 0.406±0.13 0.301±0.16 0.371±0.13 0.059±0.00 0.075±0.00 0.077±0.00 0.096±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009D CIL_00009D_0002 CGP 4:3574875-3813122
CIL_0001U6 CIL_0001U6_0002 CGP 4:3678115-3835665

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325307 HMGB3-001 protein_coding Homo_sapiens 0 743
ENST00000393368 HMGB3P1-001 processed_pseudogene Homo_sapiens 0 501
ENST00000400214 HMGB3P7-001 processed_pseudogene Homo_sapiens 0 361
ENST00000406327 HMGB3P18-001 processed_pseudogene Homo_sapiens 0 514
ENST00000411913 HMGB3P2-001 processed_pseudogene Homo_sapiens 0 531
ENST00000414981 HMGB3P23-001 processed_pseudogene Homo_sapiens 0 320
ENST00000417997 HMGB3P20-001 processed_pseudogene Homo_sapiens 0 593
ENST00000419110 HMGB3-002 protein_coding Homo_sapiens 0 710
ENST00000430118 HMGB3-004 protein_coding Homo_sapiens 0 551
ENST00000433260 HMGB3P24-001 processed_pseudogene Homo_sapiens 0 632
ENST00000434734 HMGB3P10-001 processed_pseudogene Homo_sapiens 0 540
ENST00000438745 HMGB3P12-001 processed_pseudogene Homo_sapiens 0 316
ENST00000440127 HMGB3P11-001 processed_pseudogene Homo_sapiens 0 595
ENST00000441799 HMGB3P9-001 processed_pseudogene Homo_sapiens 0 440
ENST00000442010 HMGB3P22-002 processed_transcript Homo_sapiens 0 339
ENST00000444896 HMGB3P6-001 processed_pseudogene Homo_sapiens 0 684
ENST00000448905 HMGB3-201 protein_coding Homo_sapiens 0 743
ENST00000449709 HMGB3P8-001 processed_pseudogene Homo_sapiens 0 577
ENST00000451823 HMGB3P22-001 transcribed_processed_pseudogene Homo_sapiens 0 556
ENST00000455596 HMGB3-003 protein_coding Homo_sapiens 0 721
ENST00000457863 HMGB3P30-001 processed_pseudogene Homo_sapiens 0 601
ENST00000494195 HMGB3P14-001 processed_pseudogene Homo_sapiens 0 337
ENST00000504195 HMGB3P17-001 processed_pseudogene Homo_sapiens 0 283
ENST00000507326 HMGB3P15-001 processed_pseudogene Homo_sapiens 0 597
ENST00000510526 HMGB3P3-001 processed_pseudogene Homo_sapiens 0 337
ENST00000511263 HMGB3P13-001 processed_pseudogene Homo_sapiens 0 268
ENST00000528472 CTD-2028E8.1-001 processed_pseudogene Homo_sapiens 0 416
ENST00000560051 HMGB3P26-001 processed_pseudogene Homo_sapiens 0 551
ENST00000588063 RP11-861E21.3-001 processed_pseudogene Homo_sapiens 0 584
ENST00000589177 HMGB3P27-001 processed_pseudogene Homo_sapiens 0 593

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