C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 18367
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176139 Gm18367-001 ENSMUSG00000093589 10090 - 14:115555923-115556522 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyOvaryENSMUST00000176139
Transcript ID Adipose Brain Colon Kidney Ovary
ENSMUST00000176139 0.082±0.00 0.057±0.04 0.332±0.12 0.080±0.00 0.796±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EC CIL_0002EC_0002 CGP 14:115092215-117979529

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325307 HMGB3-001 protein_coding Homo_sapiens 0 599
ENST00000393368 HMGB3P1-001 processed_pseudogene Homo_sapiens 0 455
ENST00000400214 HMGB3P7-001 processed_pseudogene Homo_sapiens 0 326
ENST00000406327 HMGB3P18-001 processed_pseudogene Homo_sapiens 0 459
ENST00000413333 HMGB3P31-001 processed_pseudogene Homo_sapiens 0 462
ENST00000417997 HMGB3P20-001 processed_pseudogene Homo_sapiens 0 486
ENST00000419110 HMGB3-002 protein_coding Homo_sapiens 0 560
ENST00000430118 HMGB3-004 protein_coding Homo_sapiens 0 457
ENST00000434734 HMGB3P10-001 processed_pseudogene Homo_sapiens 0 407
ENST00000440127 HMGB3P11-001 processed_pseudogene Homo_sapiens 0 481
ENST00000441799 HMGB3P9-001 processed_pseudogene Homo_sapiens 0 337
ENST00000442010 HMGB3P22-002 processed_transcript Homo_sapiens 0 219
ENST00000444896 HMGB3P6-001 processed_pseudogene Homo_sapiens 0 556
ENST00000448905 HMGB3-201 protein_coding Homo_sapiens 0 599
ENST00000449709 HMGB3P8-001 processed_pseudogene Homo_sapiens 0 486
ENST00000451823 HMGB3P22-001 transcribed_processed_pseudogene Homo_sapiens 0 433
ENST00000455596 HMGB3-003 protein_coding Homo_sapiens 0 580
ENST00000457863 HMGB3P30-001 processed_pseudogene Homo_sapiens 0 510
ENST00000510526 HMGB3P3-001 processed_pseudogene Homo_sapiens 0 193
ENST00000511263 HMGB3P13-001 processed_pseudogene Homo_sapiens 0 291
ENST00000588063 RP11-861E21.3-001 processed_pseudogene Homo_sapiens 0 479
ENST00000589177 HMGB3P27-001 processed_pseudogene Homo_sapiens 0 494

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