C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6104
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078030 Gm6104-201 ENSMUSG00000062588 10090 - 1:4879202-4880669 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078030
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078030 0.287±0.18 0.151±0.00 0.152±0.02 22.893±17.12 0.175±0.11 0.300±0.10 0.113±0.02 0.276±0.09 9.998±17.35 0.255±0.11 0.069±0.00 0.310±0.19 0.138±0.11 0.124±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TN CIL_0008TN_0002 VISTA 1:4721600-5324300
CIL_00053V CIL_00053V_0002 CGP 1:4773206-4886770

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325307 HMGB3-001 protein_coding Homo_sapiens 0 832
ENST00000393368 HMGB3P1-001 processed_pseudogene Homo_sapiens 0 579
ENST00000400214 HMGB3P7-001 processed_pseudogene Homo_sapiens 0 363
ENST00000403971 HMGB3P19-001 processed_pseudogene Homo_sapiens 0 503
ENST00000406327 HMGB3P18-001 processed_pseudogene Homo_sapiens 0 551
ENST00000411913 HMGB3P2-001 processed_pseudogene Homo_sapiens 0 599
ENST00000413333 HMGB3P31-001 processed_pseudogene Homo_sapiens 0 662
ENST00000414981 HMGB3P23-001 processed_pseudogene Homo_sapiens 0 353
ENST00000417997 HMGB3P20-001 processed_pseudogene Homo_sapiens 0 673
ENST00000419110 HMGB3-002 protein_coding Homo_sapiens 0 776
ENST00000430118 HMGB3-004 protein_coding Homo_sapiens 0 634
ENST00000433260 HMGB3P24-001 processed_pseudogene Homo_sapiens 0 693
ENST00000434734 HMGB3P10-001 processed_pseudogene Homo_sapiens 0 571
ENST00000440127 HMGB3P11-001 processed_pseudogene Homo_sapiens 0 647
ENST00000441799 HMGB3P9-001 processed_pseudogene Homo_sapiens 0 486
ENST00000442010 HMGB3P22-002 processed_transcript Homo_sapiens 0 383
ENST00000444896 HMGB3P6-001 processed_pseudogene Homo_sapiens 0 767
ENST00000448905 HMGB3-201 protein_coding Homo_sapiens 0 832
ENST00000449709 HMGB3P8-001 processed_pseudogene Homo_sapiens 0 654
ENST00000451823 HMGB3P22-001 transcribed_processed_pseudogene Homo_sapiens 0 617
ENST00000455596 HMGB3-003 protein_coding Homo_sapiens 0 802
ENST00000457863 HMGB3P30-001 processed_pseudogene Homo_sapiens 0 664
ENST00000504195 HMGB3P17-001 processed_pseudogene Homo_sapiens 0 291
ENST00000507326 HMGB3P15-001 processed_pseudogene Homo_sapiens 0 651
ENST00000510526 HMGB3P3-001 processed_pseudogene Homo_sapiens 0 335
ENST00000511263 HMGB3P13-001 processed_pseudogene Homo_sapiens 0 296
ENST00000528472 CTD-2028E8.1-001 processed_pseudogene Homo_sapiens 0 448
ENST00000560051 HMGB3P26-001 processed_pseudogene Homo_sapiens 0 586
ENST00000588063 RP11-861E21.3-001 processed_pseudogene Homo_sapiens 0 632
ENST00000589177 HMGB3P27-001 processed_pseudogene Homo_sapiens 0 660

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