C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132145 Hmgb3-006 ENSMUSG00000015217 10090 + X:71557783-71559773 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastMuscleOvaryPlacentaTestisENSMUST00000132145
Transcript ID Brain Breast Muscle Ovary Placenta Testis
ENSMUST00000132145 1.620±0.00 0.396±0.00 0.793±0.22 8.960±2.84 1.450±0.67 2.513±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DG CIL_0009DG_0002 VISTA X:71400355-72001555
CIL_0000UN CIL_0000UN_0003 CGP X:71420060-71560676
CIL_0001AV CIL_0001AV_0002 CGP X:71555918-71669257

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325307 HMGB3-001 protein_coding Homo_sapiens 0 806
ENST00000393368 HMGB3P1-001 processed_pseudogene Homo_sapiens 0 571
ENST00000400214 HMGB3P7-001 processed_pseudogene Homo_sapiens 0 351
ENST00000403971 HMGB3P19-001 processed_pseudogene Homo_sapiens 0 496
ENST00000406327 HMGB3P18-001 processed_pseudogene Homo_sapiens 0 545
ENST00000411913 HMGB3P2-001 processed_pseudogene Homo_sapiens 0 593
ENST00000413333 HMGB3P31-001 processed_pseudogene Homo_sapiens 0 634
ENST00000414981 HMGB3P23-001 processed_pseudogene Homo_sapiens 0 348
ENST00000417997 HMGB3P20-001 processed_pseudogene Homo_sapiens 0 645
ENST00000419110 HMGB3-002 protein_coding Homo_sapiens 0 791
ENST00000430118 HMGB3-004 protein_coding Homo_sapiens 0 649
ENST00000433260 HMGB3P24-001 processed_pseudogene Homo_sapiens 0 675
ENST00000434734 HMGB3P10-001 processed_pseudogene Homo_sapiens 0 553
ENST00000438745 HMGB3P12-001 processed_pseudogene Homo_sapiens 0 350
ENST00000440127 HMGB3P11-001 processed_pseudogene Homo_sapiens 0 621
ENST00000441799 HMGB3P9-001 processed_pseudogene Homo_sapiens 0 460
ENST00000442010 HMGB3P22-002 processed_transcript Homo_sapiens 0 383
ENST00000444896 HMGB3P6-001 processed_pseudogene Homo_sapiens 0 747
ENST00000448905 HMGB3-201 protein_coding Homo_sapiens 0 808
ENST00000449709 HMGB3P8-001 processed_pseudogene Homo_sapiens 0 640
ENST00000451823 HMGB3P22-001 transcribed_processed_pseudogene Homo_sapiens 0 616
ENST00000455596 HMGB3-003 protein_coding Homo_sapiens 0 808
ENST00000457863 HMGB3P30-001 processed_pseudogene Homo_sapiens 0 641
ENST00000494195 HMGB3P14-001 processed_pseudogene Homo_sapiens 0 370
ENST00000504195 HMGB3P17-001 processed_pseudogene Homo_sapiens 0 272
ENST00000507326 HMGB3P15-001 processed_pseudogene Homo_sapiens 0 634
ENST00000510526 HMGB3P3-001 processed_pseudogene Homo_sapiens 0 327
ENST00000511263 HMGB3P13-001 processed_pseudogene Homo_sapiens 0 298
ENST00000528472 CTD-2028E8.1-001 processed_pseudogene Homo_sapiens 0 440
ENST00000560051 HMGB3P26-001 processed_pseudogene Homo_sapiens 0 580
ENST00000588063 RP11-861E21.3-001 processed_pseudogene Homo_sapiens 0 623
ENST00000589177 HMGB3P27-001 processed_pseudogene Homo_sapiens 0 665

Loading