C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401707 POP1-001 ENSG00000104356 9606 + 8:98117312-98159834 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverOvaryTestisENST00000401707
Transcript ID Adrenal Brain Breast Colon Liver Ovary Testis
ENST00000401707 0.176±0.00 0.567±0.00 0.566±0.00 0.172±0.00 0.116±0.00 0.465±0.26 1.073±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000684 CIL_000684_0001 CGP 8:98102344-98159834
CIL_0008YL CIL_0008YL_0001 VISTA 8:98116253-98717204
CIL_0003C8 CIL_0003C8_0001 CGP 8:98117297-98294393

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000171 IDA ribonuclease MRP activity
GO:0000172 IDA ribonuclease MRP complex
GO:0001682 IEA tRNA 5'-leader removal
GO:0004526 IEA:IDA ribonuclease P activity
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005655 IDA nucleolar ribonuclease P complex
GO:0006396 IEA RNA processing
GO:0016078 IDA tRNA catabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0090501 IDA RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079028 Pop1-002 protein_coding Mus_musculus 0 2346
ENSMUST00000052290 Pop1-001 protein_coding Mus_musculus 0 1423
ENSMUST00000132427 Pop1-005 retained_intron Mus_musculus 0 571
ENSMUST00000155073 Pop1-004 processed_transcript Mus_musculus 0 351

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