C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 33
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401878 RBM33-007 ENSG00000184863 9606 + 7:155644679-155781479 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000401878
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000401878 3.940±0.00 4.570±0.00 2.291±0.00 3.278±2.13 2.853±1.10 2.600±0.06 1.475±1.13 2.191±0.50 1.764±0.37 3.806±1.93 4.752±0.00 2.361±0.08 1.053±0.29 3.962±1.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KT CIL_0008KT_0001 VISTA 7:155171352-155773114
CIL_000962 CIL_000962_0001 VISTA 7:155454922-156056094
CIL_0006DB CIL_0006DB_0002 CGP 7:155474206-155781485
CIL_0006DC CIL_0006DC_0002 CGP 7:155644451-155812273

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059644 Rbm33-201 protein_coding Mus_musculus 0 1399
ENSMUST00000114884 Rbm33-003 protein_coding Mus_musculus 0 1399
ENSMUST00000090355 Rbm33-002 protein_coding Mus_musculus 0 1050
ENSMUST00000030920 Rbm33-001 protein_coding Mus_musculus 0 771
ENSMUST00000133313 Rbm33-004 protein_coding Mus_musculus 5e-35 156

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