C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 33
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059644 Rbm33-201 ENSMUSG00000048271 10090 + 5:28317189-28419242 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000059644
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000059644 1.436±0.00 7.682±2.25 4.541±0.80 6.858±0.99 2.014±0.55 2.027±0.00 2.470±0.65 5.214±1.17 5.899±1.86 4.117±1.44 2.456±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KT CIL_0008KT_0002 VISTA 5:27878923-28480422
CIL_000962 CIL_000962_0002 VISTA 5:28103755-28704882
CIL_0006DB CIL_0006DB_0003 CGP 5:28200819-28419244
CIL_0006DC CIL_0006DC_0003 CGP 5:28317121-28467101

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287912 RBM33-008 protein_coding Homo_sapiens 0 787
ENST00000307403 RBM33-009 nonsense_mediated_decay Homo_sapiens 0 904
ENST00000341148 RBM33-001 protein_coding Homo_sapiens 0 898
ENST00000392755 RBM33-004 protein_coding Homo_sapiens 3e-36 156
ENST00000392759 RBM33-005 protein_coding Homo_sapiens 0 1182
ENST00000392761 RBM33-003 protein_coding Homo_sapiens 0 1399
ENST00000401878 RBM33-007 protein_coding Homo_sapiens 0 1399
ENST00000440108 RBM33-010 protein_coding Homo_sapiens 0 907

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