C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L35 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403133 RPL35P3-001 ENSG00000219902 9606 - 6:105302453-105302823 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000403133
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000403133 0.253±0.00 0.277±0.00 0.547±0.00 0.432±0.20 0.346±0.12 0.137±0.00 0.063±0.00 0.295±0.00 0.062±0.00 0.069±0.00 0.419±0.00 0.638±0.72 0.312±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089G CIL_00089G_0001 VISTA 6:104925514-105527976
CIL_00082P CIL_00082P_0001 VISTA 6:105003758-105605764

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080861 Rpl35-001 protein_coding Mus_musculus 0 315
ENSMUST00000102782 Gm2000-001 protein_coding Mus_musculus 0 309
ENSMUST00000152441 Rpl35-003 processed_transcript Mus_musculus 0 305
ENSMUST00000165229 Gm10269-201 protein_coding Mus_musculus 0 292
ENSMUST00000118982 Gm4342-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000117147 Gm12460-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000119868 Gm13717-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000134694 Itgam-010 protein_coding Mus_musculus 8.40779e-45 183
ENSMUST00000098015 Itgam-001 protein_coding Mus_musculus 8.40779e-45 183
ENSMUST00000120817 Gm7212-001 processed_pseudogene Mus_musculus 4e-38 161
ENSMUST00000117995 Gm12225-001 processed_pseudogene Mus_musculus 6e-26 121

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