C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L35
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080861 Rpl35-001 ENSMUSG00000062997 10090 - 2:39001580-39005624 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080861
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080861 85.797±27.63 23.843±5.10 302.210±22.75 181.402±4.64 48.400±20.46 70.585±26.73 43.946±8.99 67.602±25.34 188.135±180.22 65.630±1.99 53.456±11.32 72.611±27.49 184.228±102.86 84.479±39.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075G CIL_00075G_0002 CGP 2:38931978-39006168
CIL_00075H CIL_00075H_0002 CGP 2:38997476-39006168
CIL_00075E CIL_00075E_0002 CGP 2:39001580-39015877

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000348462 RPL35-001 protein_coding Homo_sapiens 0 470
ENST00000373570 RPL35-005 protein_coding Homo_sapiens 0 270
ENST00000402419 RPL35P2-001 processed_pseudogene Homo_sapiens 0 418
ENST00000403133 RPL35P3-001 processed_pseudogene Homo_sapiens 0 315
ENST00000433284 RPL35P8-001 processed_pseudogene Homo_sapiens 0 252
ENST00000433398 RPL35P5-001 processed_pseudogene Homo_sapiens 0 420
ENST00000450819 RPL35P1-001 processed_pseudogene Homo_sapiens 0 396
ENST00000487431 RPL35-004 retained_intron Homo_sapiens 0 464
ENST00000493018 RPL35-003 nonsense_mediated_decay Homo_sapiens 0 270

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