C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: F-box protein 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403359 FBXO11-001 ENSG00000138081 9606 - 2:47806920-47905793 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000403359
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000403359 12.626±0.00 8.765±0.00 12.933±7.64 13.655±0.00 8.079±4.23 5.640±3.29 11.980±0.00 4.351±2.27 8.985±2.52 3.957±2.65 10.985±3.25 3.651±1.94 10.257±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066I CIL_00066I_0001 CGP 2:47695530-47905793
CIL_00063U CIL_00063U_0001 CGP 2:47789316-48379294

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 NAS ubiquitin ligase complex
GO:0004842 IEA:NAS ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006464 IDA cellular protein modification process
GO:0006511 NAS ubiquitin-dependent protein catabolic process
GO:0007605 IEA sensory perception of sound
GO:0008270 IEA zinc ion binding
GO:0016274 IDA protein-arginine N-methyltransferase activity
GO:0016567 IEA protein ubiquitination
GO:0035246 IDA peptidyl-arginine N-methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005504 Fbxo11-001 protein_coding Mus_musculus 0 5934
ENSMUST00000130379 Fbxo11-004 protein_coding Mus_musculus 0 5594
ENSMUST00000135639 Fbxo11-002 nonsense_mediated_decay Mus_musculus 0 2460
ENSDART00000088099 fbxo11a-201 protein_coding Danio_rerio 0 1814
ENSMUST00000127334 Fbxo11-003 retained_intron Mus_musculus 0 1194
ENSDART00000139490 fbxo11a-002 protein_coding Danio_rerio 0 521
ENSDART00000139513 fbxo11a-003 processed_transcript Danio_rerio 0 213
ENSDART00000153436 fbxo11a-001 protein_coding Danio_rerio 0 193

Loading