C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405359 AC016739.2-001 ENSG00000218175 9606 - 2:176200908-176201252 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000405359
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000405359 0.173±0.00 0.562±0.00 0.138±0.00 0.397±0.00 0.538±0.00 0.224±0.00 0.193±0.00 0.168±0.00 1.058±0.00 1.193±0.88 0.897±0.81 0.433±0.23 0.455±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_00017R CIL_00017R_0001 CGP 2:176188579-176338025

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180255 Gm11942-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000008036 Rplp1-201 protein_coding Mus_musculus 0 433
ENSMUST00000172206 Gm17511-201 protein_coding Mus_musculus 0 427
ENSMUST00000073722 Gm10073-201 protein_coding Mus_musculus 0 422
ENSMUST00000179385 Gm13144-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000118208 Gm13777-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000117496 Gm13035-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000177803 Gm13249-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000119875 Gm13163-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000118238 Gm13229-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000118035 Gm13137-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000189517 Gm5244-002 processed_transcript Mus_musculus 0 324
ENSMUST00000120994 Gm13246-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000164001 Gm5244-001 transcribed_processed_pseudogene Mus_musculus 0 318
ENSMUST00000117047 Gm12165-001 processed_pseudogene Mus_musculus 0 307

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