C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain kinase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406516 LIMK2-002 ENSG00000182541 9606 + 22:31212274-31277638 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000406516
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000406516 1.055±0.00 2.381±0.05 0.510±0.40 0.554±0.00 0.834±0.00 9.280±0.00 1.575±0.00 10.022±0.00 10.483±0.00 5.719±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EW CIL_0006EW_0002 CGP 22:31212239-31292534

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0008270 IEA zinc ion binding
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0042325 IEA regulation of phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101638 Limk2-001 protein_coding Mus_musculus 0 2098
ENSMUST00000101642 Limk2-003 protein_coding Mus_musculus 0 2098
ENSMUST00000101640 Limk2-002 protein_coding Mus_musculus 0 2021
ENSMUST00000110029 Limk2-004 protein_coding Mus_musculus 0 1548
ENSMUST00000134576 Limk2-005 processed_transcript Mus_musculus 0 1471
ENSMUST00000070850 Ppp1r14b-201 protein_coding Mus_musculus 0 717
ENSMUST00000125832 Limk2-012 processed_transcript Mus_musculus 0 660
ENSMUST00000142926 Limk2-011 processed_transcript Mus_musculus 0 531
ENSMUST00000123689 Limk2-007 processed_transcript Mus_musculus 0 438
ENSMUST00000118351 Gm7332-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000148091 Limk2-010 processed_transcript Mus_musculus 0 409
ENSMUST00000118131 Gm8503-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000122049 Gm15173-001 processed_pseudogene Mus_musculus 0 215
ENSMUST00000119371 Gm9103-001 processed_pseudogene Mus_musculus 9.99967e-42 176
ENSDART00000093188 limk1a-001 protein_coding Danio_rerio 3e-32 145
ENSMUST00000147344 Limk2-009 processed_transcript Mus_musculus 0.000000000000001 90

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