C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: par-3 family cell polarity regulator beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406610 PARD3B-001 ENSG00000116117 9606 + 2:204545793-205620162 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000406610
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000406610 0.848±0.00 1.130±0.00 0.731±0.00 1.648±0.29 2.193±0.00 0.277±0.13 0.353±0.01 2.091±0.00 1.307±0.70 2.250±1.26 0.541±0.10 0.876±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001R0 CIL_0001R0_0001 CGP 2:203936748-205620162
CIL_0001R1 CIL_0001R1_0001 CGP 2:204545793-205798133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005923 IEA tight junction
GO:0007049 IEA cell cycle
GO:0016020 IEA membrane
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075374 Pard3b-001 protein_coding Mus_musculus 0 3764
ENSMUST00000094906 Pard3b-003 protein_coding Mus_musculus 0 2870
ENSMUST00000046673 Pard3b-002 protein_coding Mus_musculus 0 1908
ENSMUST00000188325 Pard3b-007 retained_intron Mus_musculus 0 1629
ENSMUST00000138768 Pard3b-004 processed_transcript Mus_musculus 0 706
ENSMUST00000129030 Pard3b-005 retained_intron Mus_musculus 0 377

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